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genomics: prominent genome projects > Fugu rubripes (puffer fish)

current topics in biotechnology:
focus on" X-omics"
> genomics >
genome projects:
Fugu rubripes

Prominent Genome Projects: Fugu rubripes
In 1989 Sydney Brenner, along with his colleagues Greg Elgar, Samuel Aparicio, and Byrappa Venkatesh established F. rubripes as a model organism for genomics. Although, the genome of the puffer fish contains essentially the same gene repertoire as the human genome, its size is only one eighth the size of the human genome. After realizing the value of the Fugu genome, the International Fugu Genome Consortium was formed in November 2000. The consortium which sequenced the puffer fish genome (draft sequence which covered about 95% of the genome) in less than a year was led by the US Department of Energy’s Joint Genome Institute, and the Singapore Biomedical Research Council’s Institute for Molecular and Cell Biology. Also part of the consortium are the MRC UK Human Genome Mapping Resource Center, the Cambridge University Department of Oncology, and the Institute for Systems Biology. The sequencing efforts of the consortium were bolstered by Celera Genomics and Myriad Genetics, Inc.

IMCB Fugu Genome Project
Institute of Molecular & Cell Biology (IMCB) Singapore
The home page of the Fugu Genome Project provides comprehensive information about the Fugu Genome Project, i.e. Consortium, BLAST search, Fugu Assemblies, project documentation, annotation tools and downloads.

Fugu Genome Browser
Fugu Ensembl is a joint project between the IMCB and the EMBL - EBI to produce and maintain an automatic annotation of the Fugu Genome.

JGI Fugu rubripes v3.0
DOE Joint Genome Institute
Searchable information resource which provides BLAST search, navigation through molecular function, cellular components and bio processes, downloads and general information about the genome of the puffer fish.

 

 
Classification
Kingdom Animalia
Phylum Chordata
Class Actinopterygii
Order Tetra-odontiformes
Family Tetraodontidae
Genus Takifugu (Fugu)
Species rubripes
genome
DNA ~0.4 pg
size 365 Mbp
chromosomes 22
genes >30,000
 
 
   
 

 

 

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